Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5855094-SRR5855095/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  118,044,334
 Normal Paired: 97,890,699 (82.93%)
 Chimeric Paired: 4,881 (0.00%)
 Chimeric Ambiguous: 9,038 (0.01%)
 Unmapped: 20,139,716 (17.06%)
 Ligation Motif Present: 15,533 (0.01%)
Alignable (Normal+Chimeric Paired): 97,895,580 (82.93%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-02T21:18:45,661]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 83,171,194 (70.46%)
PCR Duplicates: 14,724,386 (12.47%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 291,908,133
Intra-fragment Reads: 11,947,245 (10.12% / 14.36%)
Below MAPQ Threshold: 15,822,659 (13.40% / 19.02%)
Hi-C Contacts: 55,401,290 (46.93% / 66.61%)
 Ligation Motif Present: 9,163  (0.01% / 0.01%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,735,987  (9.94% / 14.11%)
Intra-chromosomal: 43,665,303  (36.99% / 52.50%)
Short Range (<20Kb): 10,004,011  (8.47% / 12.03%)
Long Range (>20Kb): 33,661,251  (28.52% / 40.47%)